CTpathway ( a Crosstalk-based pathway enrichment analysis method)

Basic parameters

Pathway Database

Gene ID

Data Type

Upload Data

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Example Data

Email Address

Advanced parameters

Permutation Number

R Value

Significance Level

FDR P value

If any publication makes use of analyses inspired by CTpathway, please cite: Liu, H., Yuan, M., Mitra, R. et al. CTpathway: a CrossTalk-based pathway enrichment analysis method for cancer research. Genome Med 14, 118 (2022). https://doi.org/10.1186/s13073-022-01119-6.

Introduction

CTpathway is an on-line crosstalk-based pathway enrichment analysis tool based on eight pathway databases. We support performing pathway enrichment analysis from KEGG, Reactome, PANTHER, HumanCyc, INOH, NetPath, PID and WikiPathways. Compared with the existing methods, the CTpathway outperformed them in accuracy, robustness, and running time.

News

We added a function to show log2FC, P value and Risk score(RS) for each gene included in the pathway. (02/01/2023)
CTpathway manuscript is online in Genome Medicine. (10/13/2022)
CTpathway is now online. (4/10/2021)