Tools

ChemoCommunity

ChemoCommunity is a user-friendly database that collected comprehensive information about chemoresponse communities.

CREAM

CREAM (Chemotherapy ResistancE-Associated MiRSNP Database) is a free online database depositing the functional miRSNP associated with chemotherapy resistance.

CTpathway

CTpathway is an on-line crosstalk-based pathway enrichment analysis tool.

D-lnc

D-lnc provides a comprehensive query and analysis platform to detect the experimentally validated and the computational predicted modification of drugs on lncRNA expression.

EpimiR

EpimiR stores the experimentally validated mutual regulations between epigenetic modifications and miRNAs.

ncDR

ncDR database is a comprehensive cheminformatics and bioinformatics resource that collect curated and predicted drug resistance-related non-coding RNA (ncRNA).

ncEP

ncEP records the low-throughput experimentally validated proteins or peptides encoded by ncRNAs, such as lncRNAs, circRNAs and pri-miRNAs.

ncFO

ncFO documents the experimentally validated ncRNA–ferroptosis associations and incorporates two strategies for prediction of ferroptosis-related ncRNA.

ncRI

ncRI provides a manually curated database for experimentally validated non-coding RNAs and their important roles in inflammatory diseases.

ncRNADrug

ncRNADrug is a centralized resource that includes experimentally validated and computationally predicted ncRNAs associated with drug resistance, as well as ncRNAs targeted by drugs.

Psmir

Psmir is a comprehensive database that presents computationally predicted small molecule-miRNA associations through comparison of current gene expression profiles under miRNA perturbation and drug treatment.

REDR

REDR database provides comprehensive drug resistance-related RNA editing events.

StrokeMap

StrokeMap provides visualization and exploration tools for spatial and single-cell transcriptomics data of the ischemic mouse brain.

SM2miR

SM2miR is a manual curated database which collects and incorporates the experimentally validated small molecules' effects on miRNA expression in 20 species from the published papers.

SmiRN-AD

SmiRN-AD (Small molecule and miRNA association Network in Alzheimer's Disease) is a free online database about the associations between bioactive small molecules and AD-related miRNAs, which are identified based on the expression signatures of the bioactive small molecules perturbations and AD-related miRNAs regulations.

^TMREC

^TMREC database provides a user-friendly interface for convenient retrieval and visualization of TF-miRNA regulatory cascades and clusters in specific disease by TF, miRNA or disease name.

TPEA

TPEA is a novel Topology-based pathway enrichment analysis R package, which integrated the global position of the nodes and the topological property of the pathways in Kyoto Encyclopedia of Genes and Genomes Database.